com.inscoper.nbo.Experiment¶

Represents the XML element Experiment. More...

Inherits from com.inscoper.nbo.NBOBaseClass

Public Functions¶

	Name
synchronized void	delete()
	Experiment()
String	getTypeName() Returns the class type name.
String	getXMLName() Returns the XML element name corresponding to this class.
ENBOType	getNBOType() Returns the NBO Type corresponding to this class.
NBOBaseClassVector	getChildren() Returns a list of all classes derived from this class.
NBOBaseClassVector	getSubElements() Returns a list of all child elements contained in this class.
void	fromJsonFile(String path, boolean validate) Populates this object from a JSON file.
void	fromJsonFile(String path) Populates this object from a JSON file.
void	fromJsonString(String json_string, boolean validate) Populates this object from a JSON string.
void	fromJsonString(String json_string) Populates this object from a JSON string.
void	fromXmlFile(String path, boolean validate) Populates this object from a XML file.
void	fromXmlFile(String path) Populates this object from a XML file.
void	fromXmlString(String xml_string, boolean validate) Populates this object from a XML string.
void	fromXmlString(String xml_string) Populates this object from a XML string.
void	toXmlFile(String filename, boolean validate) Serializes this object to an XML file.
void	toXmlFile(String filename) Serializes this object to an XML file.
String	toXmlString(boolean validate) Serializes this object to an XML string.
String	toXmlString() Serializes this object to an XML string.
void	setID(ExperimentID_Type value, boolean validate) Sets the value of the ID attribute.
void	setID(ExperimentID_Type value) Sets the value of the ID attribute.
ExperimentID_Type	getID() Returns the value of the ID attribute.
void	resetID() Resets the ID attribute to an unset state.
boolean	hasID() Checks whether the optional ID attribute is present.
void	setName(Denomination_Type value, boolean validate) Sets the value of the Name attribute.
void	setName(Denomination_Type value) Sets the value of the Name attribute.
Denomination_Type	getName() Returns the value of the Name attribute.
void	resetName() Resets the Name attribute to an unset state.
boolean	hasName() Checks whether the optional Name attribute is present.
void	setPurpose(ExperimentPurpose_Type value, boolean validate) Sets the value of the Purpose attribute.
void	setPurpose(ExperimentPurpose_Type value) Sets the value of the Purpose attribute.
ExperimentPurpose_Type	getPurpose() Returns the value of the Purpose attribute.
void	resetPurpose() Resets the Purpose attribute to an unset state.
boolean	hasPurpose() Checks whether the optional Purpose attribute is present.
void	setLabellingMethod(String value, boolean validate) Sets the value of the LabellingMethod attribute.
void	setLabellingMethod(String value) Sets the value of the LabellingMethod attribute.
String	getLabellingMethod() Returns the value of the LabellingMethod attribute.
void	resetLabellingMethod() Resets the LabellingMethod attribute to an unset state.
boolean	hasLabellingMethod() Checks whether the LabellingMethod attribute is present.
void	setLabellingMethodTermAccession(String value, boolean validate) Sets the value of the LabellingMethodTermAccession attribute.
void	setLabellingMethodTermAccession(String value) Sets the value of the LabellingMethodTermAccession attribute.
String	getLabellingMethodTermAccession() Returns the value of the LabellingMethodTermAccession attribute.
void	resetLabellingMethodTermAccession() Resets the LabellingMethodTermAccession attribute to an unset state.
boolean	hasLabellingMethodTermAccession() Checks whether the LabellingMethodTermAccession attribute is present.
void	setTag(String value, boolean validate) Sets the value of the Tag attribute.
void	setTag(String value) Sets the value of the Tag attribute.
String	getTag() Returns the value of the Tag attribute.
void	resetTag() Resets the Tag attribute to an unset state.
boolean	hasTag() Checks whether the Tag attribute is present.
void	setTagTermAccession(String value, boolean validate) Sets the value of the TagTermAccession attribute.
void	setTagTermAccession(String value) Sets the value of the TagTermAccession attribute.
String	getTagTermAccession() Returns the value of the TagTermAccession attribute.
void	resetTagTermAccession() Resets the TagTermAccession attribute to an unset state.
boolean	hasTagTermAccession() Checks whether the TagTermAccession attribute is present.
void	setHystochemistryType(HystochemistryType_Type value, boolean validate) Sets the value of the HystochemistryType attribute.
void	setHystochemistryType(HystochemistryType_Type value) Sets the value of the HystochemistryType attribute.
HystochemistryType_Type	getHystochemistryType() Returns the value of the HystochemistryType attribute.
void	resetHystochemistryType() Resets the HystochemistryType attribute to an unset state.
boolean	hasHystochemistryType() Checks whether the optional HystochemistryType attribute is present.
void	setExperimenterRef_List(ExperimenterRefVector value, boolean validate) Sets the list of ExperimenterRef elements.
void	setExperimenterRef_List(ExperimenterRefVector value) Sets the list of ExperimenterRef elements.
ExperimenterRefVector	getExperimenterRef_List() Returns the list of ExperimenterRef elements.
void	addToExperimenterRef_List(ExperimenterRef value, boolean validate) Adds a new ExperimenterRef element to this object.
void	addToExperimenterRef_List(ExperimenterRef value) Adds a new ExperimenterRef element to this object.
void	clearExperimenterRef_List() Clear the list of ExperimenterRef.
void	setSample_List(SampleVector value, boolean validate) Sets the list of Sample elements.
void	setSample_List(SampleVector value) Sets the list of Sample elements.
SampleVector	getSample_List() Returns the list of Sample elements.
void	addToSample_List(Sample value, boolean validate) Adds a new Sample element to this object.
void	addToSample_List(Sample value) Adds a new Sample element to this object.
void	clearSample_List() Clear the list of Sample.
void	setMicrobeamManipulation_List(MicrobeamManipulationVector value, boolean validate) Sets the list of MicrobeamManipulation elements.
void	setMicrobeamManipulation_List(MicrobeamManipulationVector value) Sets the list of MicrobeamManipulation elements.
MicrobeamManipulationVector	getMicrobeamManipulation_List() Returns the list of MicrobeamManipulation elements.
void	addToMicrobeamManipulation_List(MicrobeamManipulation value, boolean validate) Adds a new MicrobeamManipulation element to this object.
void	addToMicrobeamManipulation_List(MicrobeamManipulation value) Adds a new MicrobeamManipulation element to this object.
void	clearMicrobeamManipulation_List() Clear the list of MicrobeamManipulation.
void	setDescription(Description value, boolean validate) Sets the value of the Description element.
void	setDescription(Description value) Sets the value of the Description element.
Description	getDescription() Returns the value of the Description element.
void	resetDescription() Resets the Description element to an unset state.
boolean	hasDescription() Checks whether the optional Description element is present.
void	setAnnotationRef(AnnotationRef value, boolean validate) Sets the value of the AnnotationRef element.
void	setAnnotationRef(AnnotationRef value) Sets the value of the AnnotationRef element.
AnnotationRef	getAnnotationRef() Returns the value of the AnnotationRef element.
void	resetAnnotationRef() Resets the AnnotationRef element to an unset state.
boolean	hasAnnotationRef() Checks whether the optional AnnotationRef element is present.
Experiment	__internal_create(long cPtr, boolean own)
Experiment	fromBase(NBOBaseClass base) Cast a NBOBaseClass to a Experiment.
StringSet	getLabellingMethodAllowedValues() Returns the allowed values for this attribut.
StringSet	getLabellingMethodTermAccessionAllowedValues() Returns the allowed values for this attribut.
StringSet	getTagAllowedValues() Returns the allowed values for this attribut.
StringSet	getTagTermAccessionAllowedValues() Returns the allowed values for this attribut.

Protected Functions¶

	Name
	Experiment(long cPtr, boolean cMemoryOwn)
void	swigSetCMemOwn(boolean own)
void	finalize()
long	getCPtr(Experiment obj)

Additional inherited members¶

Protected Functions inherited from com.inscoper.nbo.NBOBaseClass

	Name
	NBOBaseClass(long cPtr, boolean cMemoryOwn)

Detailed Description¶

public class com.inscoper.nbo.Experiment;

Represents the XML element Experiment.

This element describes the experiment during which this Image was acquired. The optional Description element may contain free text to further describe the experiment.

Public Functions Documentation¶

function delete¶

function Experiment¶

function getTypeName¶

function getXMLName¶

function getNBOType¶

function getChildren¶

function getSubElements¶

public NBOBaseClassVector getSubElements()

Returns a list of all child elements contained in this class.

Return: The list of child classes

Reimplements: com.inscoper.nbo.NBOBaseClass.getSubElements

function fromJsonFile¶

public void fromJsonFile(
    String path,
    boolean validate
)

Populates this object from a JSON file.

Parameters:

path The path to the JSON file
validate If true, validates constraints on value. Default is true.

function fromJsonFile¶

function fromJsonString¶

public void fromJsonString(
    String json_string,
    boolean validate
)

Populates this object from a JSON string.

Parameters:

json_string The JSON content as a string
validate If true, validates constraints on value. Default is true.

function fromJsonString¶

function fromXmlFile¶

public void fromXmlFile(
    String path,
    boolean validate
)

Populates this object from a XML file.

Parameters:

path The path to the XML file
validate If true, validates constraints on value. Default is true.

function fromXmlFile¶

function fromXmlString¶

public void fromXmlString(
    String xml_string,
    boolean validate
)

Populates this object from a XML string.

Parameters:

xml_string The XML content as a string
validate If true, validates constraints on value. Default is true.

function fromXmlString¶

function toXmlFile¶

public void toXmlFile(
    String filename,
    boolean validate
)

Serializes this object to an XML file.

Parameters:

filename The path to the output XML file
validate If true, validates constraints on value. Default is true.

function toXmlFile¶

function toXmlString¶

public String toXmlString(
    boolean validate
)

Serializes this object to an XML string.

Parameters:

validate If true, validates constraints on value. Default is true.

Return: A string containing the XML representation of this object

function toXmlString¶

function setID¶

public void setID(
    ExperimentID_Type value,
    boolean validate
)

Sets the value of the ID attribute.

Parameters:

value The value to set
validate If true, validates constraints on value. Default is true.

A unique identifier for this Experiment.

function setID¶

function getID¶

function resetID¶

function hasID¶

function setName¶

public void setName(
    Denomination_Type value,
    boolean validate
)

Sets the value of the Name attribute.

Parameters:

value The value to set
validate If true, validates constraints on value. Default is true.

A user assigned name for this Experiment.

function setName¶

function getName¶

function resetName¶

function hasName¶

function setPurpose¶

public void setPurpose(
    ExperimentPurpose_Type value,
    boolean validate
)

Sets the value of the Purpose attribute.

Parameters:

value The value to set
validate If true, validates constraints on value. Default is true.

This field records a term used the general purpose of the imaging experiment performed in this case.

function setPurpose¶

public void setPurpose(
    ExperimentPurpose_Type value
)

Sets the value of the Purpose attribute.

Parameters:

value The value to set

This field records a term used the general purpose of the imaging experiment performed in this case.

function getPurpose¶

public ExperimentPurpose_Type getPurpose()

Returns the value of the Purpose attribute.

Return: The value of the attribute

This field records a term used the general purpose of the imaging experiment performed in this case.

function resetPurpose¶

function hasPurpose¶

public boolean hasPurpose()

Checks whether the optional Purpose attribute is present.

Return: true if the optional attribute has been set, false otherwise

This field records a term used the general purpose of the imaging experiment performed in this case.

function setLabellingMethod¶

public void setLabellingMethod(
    String value,
    boolean validate
)

Sets the value of the LabellingMethod attribute.

Parameters:

value The value to set
validate If true, validates constraints on value. Default is true.

This field records a term that describes the method used for the Labelling or Visualization of the structures (i.e. molecular components) under study in this Experiment. The use of a sub-class of the 'Visualization Method' (http://purl.obolibrary.org/obo/FBbi_00000031) term from the Biological Imaging Methods Ontology (FBbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) is recommended.

function setLabellingMethod¶

public void setLabellingMethod(
    String value
)

Sets the value of the LabellingMethod attribute.

Parameters:

value The value to set

This field records a term that describes the method used for the Labelling or Visualization of the structures (i.e. molecular components) under study in this Experiment. The use of a sub-class of the 'Visualization Method' (http://purl.obolibrary.org/obo/FBbi_00000031) term from the Biological Imaging Methods Ontology (FBbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) is recommended.

function getLabellingMethod¶

public String getLabellingMethod()

Returns the value of the LabellingMethod attribute.

Return: The value of the attribute

This field records a term that describes the method used for the Labelling or Visualization of the structures (i.e. molecular components) under study in this Experiment. The use of a sub-class of the 'Visualization Method' (http://purl.obolibrary.org/obo/FBbi_00000031) term from the Biological Imaging Methods Ontology (FBbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) is recommended.

function resetLabellingMethod¶

public void resetLabellingMethod()

Resets the LabellingMethod attribute to an unset state.

This field records a term that describes the method used for the Labelling or Visualization of the structures (i.e. molecular components) under study in this Experiment. The use of a sub-class of the 'Visualization Method' (http://purl.obolibrary.org/obo/FBbi_00000031) term from the Biological Imaging Methods Ontology (FBbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) is recommended.

function hasLabellingMethod¶

public boolean hasLabellingMethod()

Checks whether the LabellingMethod attribute is present.

Return: true if the attribute has been set, false otherwise

This field records a term that describes the method used for the Labelling or Visualization of the structures (i.e. molecular components) under study in this Experiment. The use of a sub-class of the 'Visualization Method' (http://purl.obolibrary.org/obo/FBbi_00000031) term from the Biological Imaging Methods Ontology (FBbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) is recommended.

function setLabellingMethodTermAccession¶

public void setLabellingMethodTermAccession(
    String value,
    boolean validate
)

Sets the value of the LabellingMethodTermAccession attribute.

Parameters:

value The value to set
validate If true, validates constraints on value. Default is true.

This field records the Accession ID for the term used to describe the Visualization Method (also often referred to as Labelling Method). The use of a sub-classes of 'Visualization Method' (http://purl.obolibrary.org/obo/FBbi_00000031) from the Biological Imaging Methods Ontology (FBbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) is recommended.

function setLabellingMethodTermAccession¶

public void setLabellingMethodTermAccession(
    String value
)

Sets the value of the LabellingMethodTermAccession attribute.

Parameters:

value The value to set

This field records the Accession ID for the term used to describe the Visualization Method (also often referred to as Labelling Method). The use of a sub-classes of 'Visualization Method' (http://purl.obolibrary.org/obo/FBbi_00000031) from the Biological Imaging Methods Ontology (FBbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) is recommended.

function getLabellingMethodTermAccession¶

public String getLabellingMethodTermAccession()

Returns the value of the LabellingMethodTermAccession attribute.

Return: The value of the attribute

This field records the Accession ID for the term used to describe the Visualization Method (also often referred to as Labelling Method). The use of a sub-classes of 'Visualization Method' (http://purl.obolibrary.org/obo/FBbi_00000031) from the Biological Imaging Methods Ontology (FBbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) is recommended.

function resetLabellingMethodTermAccession¶

public void resetLabellingMethodTermAccession()

Resets the LabellingMethodTermAccession attribute to an unset state.

This field records the Accession ID for the term used to describe the Visualization Method (also often referred to as Labelling Method). The use of a sub-classes of 'Visualization Method' (http://purl.obolibrary.org/obo/FBbi_00000031) from the Biological Imaging Methods Ontology (FBbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) is recommended.

function hasLabellingMethodTermAccession¶

public boolean hasLabellingMethodTermAccession()

Checks whether the LabellingMethodTermAccession attribute is present.

Return: true if the attribute has been set, false otherwise

This field records the Accession ID for the term used to describe the Visualization Method (also often referred to as Labelling Method). The use of a sub-classes of 'Visualization Method' (http://purl.obolibrary.org/obo/FBbi_00000031) from the Biological Imaging Methods Ontology (FBbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) is recommended.

function setTag¶

public void setTag(
    String value,
    boolean validate
)

Sets the value of the Tag attribute.

Parameters:

value The value to set
validate If true, validates constraints on value. Default is true.

This field describes small molecules, peptides or full proteins that were used as label in this Experiment. The use of a sub-class of the 'Tag' (http://purl.obolibrary.org/obo/MI_0507) term from the Molecular Interactions Controlled Vocabulary (MI; http://purl.obolibrary.org/obo/mi.owl) is recommended.

function setTag¶

public void setTag(
    String value
)

Sets the value of the Tag attribute.

Parameters:

value The value to set

This field describes small molecules, peptides or full proteins that were used as label in this Experiment. The use of a sub-class of the 'Tag' (http://purl.obolibrary.org/obo/MI_0507) term from the Molecular Interactions Controlled Vocabulary (MI; http://purl.obolibrary.org/obo/mi.owl) is recommended.

function getTag¶

public String getTag()

Returns the value of the Tag attribute.

Return: The value of the attribute

This field describes small molecules, peptides or full proteins that were used as label in this Experiment. The use of a sub-class of the 'Tag' (http://purl.obolibrary.org/obo/MI_0507) term from the Molecular Interactions Controlled Vocabulary (MI; http://purl.obolibrary.org/obo/mi.owl) is recommended.

function resetTag¶

public void resetTag()

Resets the Tag attribute to an unset state.

This field describes small molecules, peptides or full proteins that were used as label in this Experiment. The use of a sub-class of the 'Tag' (http://purl.obolibrary.org/obo/MI_0507) term from the Molecular Interactions Controlled Vocabulary (MI; http://purl.obolibrary.org/obo/mi.owl) is recommended.

function hasTag¶

public boolean hasTag()

Checks whether the Tag attribute is present.

Return: true if the attribute has been set, false otherwise

This field describes small molecules, peptides or full proteins that were used as label in this Experiment. The use of a sub-class of the 'Tag' (http://purl.obolibrary.org/obo/MI_0507) term from the Molecular Interactions Controlled Vocabulary (MI; http://purl.obolibrary.org/obo/mi.owl) is recommended.

function setTagTermAccession¶

public void setTagTermAccession(
    String value,
    boolean validate
)

Sets the value of the TagTermAccession attribute.

Parameters:

value The value to set
validate If true, validates constraints on value. Default is true.

This records the Accession ID for the term used to describe the Tag used in this Experiment. The use of a sub-class of http://purl.obolibrary.org/obo/MI_0507 is recommended.

function setTagTermAccession¶

public void setTagTermAccession(
    String value
)

Sets the value of the TagTermAccession attribute.

Parameters:

value The value to set

This records the Accession ID for the term used to describe the Tag used in this Experiment. The use of a sub-class of http://purl.obolibrary.org/obo/MI_0507 is recommended.

function getTagTermAccession¶

public String getTagTermAccession()

Returns the value of the TagTermAccession attribute.

Return: The value of the attribute

This records the Accession ID for the term used to describe the Tag used in this Experiment. The use of a sub-class of http://purl.obolibrary.org/obo/MI_0507 is recommended.

function resetTagTermAccession¶

public void resetTagTermAccession()

Resets the TagTermAccession attribute to an unset state.

This records the Accession ID for the term used to describe the Tag used in this Experiment. The use of a sub-class of http://purl.obolibrary.org/obo/MI_0507 is recommended.

function hasTagTermAccession¶

public boolean hasTagTermAccession()

Checks whether the TagTermAccession attribute is present.

Return: true if the attribute has been set, false otherwise

This records the Accession ID for the term used to describe the Tag used in this Experiment. The use of a sub-class of http://purl.obolibrary.org/obo/MI_0507 is recommended.

function setHystochemistryType¶

public void setHystochemistryType(
    HystochemistryType_Type value,
    boolean validate
)

Sets the value of the HystochemistryType attribute.

Parameters:

value The value to set
validate If true, validates constraints on value. Default is true.

This field records a term that describes the general category of Histochemistry staining used in this case.

function setHystochemistryType¶

public void setHystochemistryType(
    HystochemistryType_Type value
)

Sets the value of the HystochemistryType attribute.

Parameters:

value The value to set

This field records a term that describes the general category of Histochemistry staining used in this case.

function getHystochemistryType¶

public HystochemistryType_Type getHystochemistryType()

Returns the value of the HystochemistryType attribute.

Return: The value of the attribute

This field records a term that describes the general category of Histochemistry staining used in this case.

function resetHystochemistryType¶

public void resetHystochemistryType()

Resets the HystochemistryType attribute to an unset state.

This field records a term that describes the general category of Histochemistry staining used in this case.

function hasHystochemistryType¶

public boolean hasHystochemistryType()

Checks whether the optional HystochemistryType attribute is present.

Return: true if the optional attribute has been set, false otherwise

This field records a term that describes the general category of Histochemistry staining used in this case.

function setExperimenterRef_List¶

public void setExperimenterRef_List(
    ExperimenterRefVector value,
    boolean validate
)

Sets the list of ExperimenterRef elements.

Parameters:

value The new list of ExperimenterRef elements
validate If true, validates constraints on value. Default is true.

This empty element refers to the Scientist (i.e., Experimenter) that performed this experiment.

function setExperimenterRef_List¶

public void setExperimenterRef_List(
    ExperimenterRefVector value
)

Sets the list of ExperimenterRef elements.

Parameters:

value The new list of ExperimenterRef elements

This empty element refers to the Scientist (i.e., Experimenter) that performed this experiment.

function getExperimenterRef_List¶

public ExperimenterRefVector getExperimenterRef_List()

Returns the list of ExperimenterRef elements.

Return: The list of ExperimenterRef elements

This empty element refers to the Scientist (i.e., Experimenter) that performed this experiment.

function addToExperimenterRef_List¶

public void addToExperimenterRef_List(
    ExperimenterRef value,
    boolean validate
)

Adds a new ExperimenterRef element to this object.

Parameters:

value The element to add
validate If true, validates constraints on value. Default is true.

This empty element refers to the Scientist (i.e., Experimenter) that performed this experiment.

function addToExperimenterRef_List¶

public void addToExperimenterRef_List(
    ExperimenterRef value
)

Adds a new ExperimenterRef element to this object.

Parameters:

value The element to add

This empty element refers to the Scientist (i.e., Experimenter) that performed this experiment.

function clearExperimenterRef_List¶

function setSample_List¶

public void setSample_List(
    SampleVector value,
    boolean validate
)

Sets the list of Sample elements.

Parameters:

value The new list of Sample elements
validate If true, validates constraints on value. Default is true.

No description available in the XSD standard.

function setSample_List¶

function getSample_List¶

function addToSample_List¶

public void addToSample_List(
    Sample value,
    boolean validate
)

Adds a new Sample element to this object.

Parameters:

value The element to add
validate If true, validates constraints on value. Default is true.

No description available in the XSD standard.

function addToSample_List¶

function clearSample_List¶

function setMicrobeamManipulation_List¶

public void setMicrobeamManipulation_List(
    MicrobeamManipulationVector value,
    boolean validate
)

Sets the list of MicrobeamManipulation elements.

Parameters:

value The new list of MicrobeamManipulation elements
validate If true, validates constraints on value. Default is true.

No description available in the XSD standard.

function setMicrobeamManipulation_List¶

public void setMicrobeamManipulation_List(
    MicrobeamManipulationVector value
)

Sets the list of MicrobeamManipulation elements.

Parameters:

value The new list of MicrobeamManipulation elements

No description available in the XSD standard.

function getMicrobeamManipulation_List¶

public MicrobeamManipulationVector getMicrobeamManipulation_List()

Returns the list of MicrobeamManipulation elements.

Return: The list of MicrobeamManipulation elements

No description available in the XSD standard.

function addToMicrobeamManipulation_List¶

public void addToMicrobeamManipulation_List(
    MicrobeamManipulation value,
    boolean validate
)

Adds a new MicrobeamManipulation element to this object.

Parameters:

value The element to add
validate If true, validates constraints on value. Default is true.

No description available in the XSD standard.

function addToMicrobeamManipulation_List¶

public void addToMicrobeamManipulation_List(
    MicrobeamManipulation value
)

Adds a new MicrobeamManipulation element to this object.

Parameters:

value The element to add

No description available in the XSD standard.

function clearMicrobeamManipulation_List¶

function setDescription¶

public void setDescription(
    Description value,
    boolean validate
)

Sets the value of the Description element.

Parameters:

value The value to set
validate If true, validates constraints on value. Default is true.

No description available in the XSD standard.

function setDescription¶

function getDescription¶

function resetDescription¶

function hasDescription¶

public boolean hasDescription()

Checks whether the optional Description element is present.

Return: true if the optional attribute has been set, false otherwise

No description available in the XSD standard.

function setAnnotationRef¶

public void setAnnotationRef(
    AnnotationRef value,
    boolean validate
)

Sets the value of the AnnotationRef element.

Parameters:

value The value to set
validate If true, validates constraints on value. Default is true.

This is a simple multi-line comment or annotation describing this component.

function setAnnotationRef¶

public void setAnnotationRef(
    AnnotationRef value
)

Sets the value of the AnnotationRef element.

Parameters:

value The value to set

This is a simple multi-line comment or annotation describing this component.

function getAnnotationRef¶

public AnnotationRef getAnnotationRef()

Returns the value of the AnnotationRef element.

Return: The value of the element

This is a simple multi-line comment or annotation describing this component.

function resetAnnotationRef¶

function hasAnnotationRef¶

public boolean hasAnnotationRef()

Checks whether the optional AnnotationRef element is present.

Return: true if the optional attribute has been set, false otherwise

This is a simple multi-line comment or annotation describing this component.

function __internal_create¶

function fromBase¶

public static Experiment fromBase(
    NBOBaseClass base
)

Cast a NBOBaseClass to a Experiment.

Parameters:

base The base class to cast

Return: The casted element, or nullptr if the cast fails

function getLabellingMethodAllowedValues¶

public static StringSet getLabellingMethodAllowedValues()

Returns the allowed values for this attribut.

Return: The list of allowed values

This field records a term that describes the method used for the Labelling or Visualization of the structures (i.e. molecular components) under study in this Experiment. The use of a sub-class of the 'Visualization Method' (http://purl.obolibrary.org/obo/FBbi_00000031) term from the Biological Imaging Methods Ontology (FBbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) is recommended.

function getLabellingMethodTermAccessionAllowedValues¶

public static StringSet getLabellingMethodTermAccessionAllowedValues()

Returns the allowed values for this attribut.

Return: The list of allowed values

This field records the Accession ID for the term used to describe the Visualization Method (also often referred to as Labelling Method). The use of a sub-classes of 'Visualization Method' (http://purl.obolibrary.org/obo/FBbi_00000031) from the Biological Imaging Methods Ontology (FBbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) is recommended.

function getTagAllowedValues¶

public static StringSet getTagAllowedValues()

Returns the allowed values for this attribut.

Return: The list of allowed values

This field describes small molecules, peptides or full proteins that were used as label in this Experiment. The use of a sub-class of the 'Tag' (http://purl.obolibrary.org/obo/MI_0507) term from the Molecular Interactions Controlled Vocabulary (MI; http://purl.obolibrary.org/obo/mi.owl) is recommended.

function getTagTermAccessionAllowedValues¶

public static StringSet getTagTermAccessionAllowedValues()

Returns the allowed values for this attribut.

Return: The list of allowed values

This records the Accession ID for the term used to describe the Tag used in this Experiment. The use of a sub-class of http://purl.obolibrary.org/obo/MI_0507 is recommended.